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This app allows the exploration of cis-regulatory elements (CREs) active in the developing mouse cerebellum.
If you are using this app, please consult and cite our publication:
Sarropoulos, I., Sepp M. et al. The regulatory landscape of cells in the developing mouse cerebellum. biorxiv (2021)
link_2_paper_XXX
1. Select a CRE
You can scroll horizontally to explore additional options.
2. Show in genome browser
Your CRE is shown in red. Other robust/non-robust CREs are shown in dark/light blue respectively.
Genomic interactions highlight CRE assignment to target genes in our study (purple/blue: in/out browser view).
Genomic interactions highlight CRE assignment to target genes in our study (purple/blue: in/out browser view).
Genomic region displayed:
Please select a CRE
4. Download data
Warning: Some of these files are large, so downloading might take a while.
RDS files contain SummarizedExperiment objects (1.16) that can be read into R using readRDS().
RDS files contain SummarizedExperiment objects (1.16) that can be read into R using readRDS().
Name
Size
Description
(2.0 GB)
Peak by cell matrix (with associated information about peaks and cells).
(1.1 GB)
chromVar motif scores (deviations and Z-scores) by cell matrix.
(70 MB)
Summary information for CREs (genomic and evolutionary characterization, activity etc).
(50 MB)
Summary information for cells (annotation, sample, clusters etc).