Explore the single nucleus RNA sequencing atlases of the human, mouse and opossum cerebellum, by Kaessmann Lab and Pfister Lab ( Datacommons ), App v2.0
Please see the corresponding app by the Pfister lab (DKFZ, KiTZ) for the analyses of the human data in the context of childhood brain tumors
Single nucleus RNA sequencing data were generated from frozen cerebellum samples from human, mouse and opossum at different developmental stages. We used 10x Genomics 3' Chromium protocol (version 2 and 3).
You can download SingleCellExperiment objects using the links below. The data is fully annotated and contains the UMAP and LIGER embeddings.
Raw sequencing data is available at heiDATA .
The source code of this app can be found here .
If you have issues or find bugs, please report them via mail or via gitlab.
Furthermore, feel free to contact us via mail: Mari Sepp , Kevin Leiss , Henrik Kaessmann